HsaEX6002955 @ hg38
Exon Skipping
Gene
ENSG00000168056 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:HGNC:6716]
Coordinates
chr11:65539548-65540382:-
Coord C1 exon
chr11:65540245-65540382
Coord A exon
chr11:65539720-65539881
Coord C2 exon
chr11:65539548-65539628
Length
162 bp
Sequences
Splice sites
3' ss Seq
ATGCCAGGTGTCTTCCGCAGAGC
3' ss Score
7.66
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
ACGTGGACGAGTGCCTGGACGAGTCCAACTGCCGGAACGGAGTGTGTGAGAACACGCGCGGCGGCTACCGCTGTGCCTGCACGCCCCCTGCCGAGTACAGTCCCGCGCAGCGCCAGTGCCTGAGCCCGGAAGAGATGG
Seq A exon
AGCGTGCCCCGGAGCGGCGCGACGTGTGCTGGAGCCAGCGCGGAGAGGACGGCATGTGCGCTGGCCCCCTGGCCGGGCCTGCCCTCACCTTCGACGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGCGCCCAATGCCGACCGTGCCCGCCGCGCGGCGCGG
Seq C2 exon
GGTCCCATTGCCCGACATCGCAGAGCGAGAGCAATTCCTTCTGGGACACAAGCCCCCTGCTGTTGGGGAAGCCCCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168056-'50-76,'50-75,52-76=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.048 C2=0.512
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=85.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0068312=TB=PU(88.1=67.3)
C2:
PF0068312=TB=PD(14.0=21.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGACGAGTGCCTGGA
R:
GGCTTCCCCAACAGCAGG
Band lengths:
210-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains