DreEX6012166 @ danRer10
Exon Skipping
Gene
ENSDARG00000035682 | ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-060526-130]
Coordinates
chr5:36977522-36980756:+
Coord C1 exon
chr5:36977522-36977680
Coord A exon
chr5:36978765-36978926
Coord C2 exon
chr5:36980667-36980756
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTCATCTCTGTCTTTTTCAGACC
3' ss Score
12.38
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TAATGGGTGTGTCTGTGGTGCACCTTACAGATGTGAATGAATGTGAGGATCCCTCCTACTGTAGGAACGGGAGATGTGTCAACACTCCCGGCTCCTTCCACTGCATTTGCACGCAGCCACTCACCTTTAGTGCAGCCCTCAAGCAATGCGTCTATGATG
Seq A exon
ACCGCACTGCCGCACATAAGGACATCTGTTTCCAGGAGGTTGATGAGGATCATATGTGCACGATGCCACGGAATGAGCTCACAGTGACATACTCGGAGTGCTGCTGTCATTATGGTCGAGGCTGGGGCCCAGAGTGCAGGACCTGTCCCATGAGAAATACAG
Seq C2 exon
TGCTTTTTAACAGGTTGTGTGAGATGCATTTGGAGACCGAGTCTGATGGAGAGGGTGACTTCCTGGCAGCTTTTTCCACCTACAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035682-'30-34,'30-33,31-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=74.1)
A:
PF0068312=TB=PU(86.0=67.3)
C2:
PF0068312=TB=PD(11.6=16.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGGGTGTGTCTGTGGTGC
R:
TGTAGGTGGAAAAAGCTGCCA
Band lengths:
243-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]