HsaEX6002955 @ hg19
Exon Skipping
Gene
ENSG00000168056 | LTBP3
Description
latent transforming growth factor beta binding protein 3 [Source:HGNC Symbol;Acc:6716]
Coordinates
chr11:65307019-65307624:-
Coord C1 exon
chr11:65307484-65307624
Coord A exon
chr11:65307191-65307352
Coord C2 exon
chr11:65307019-65307099
Length
162 bp
Sequences
Splice sites
3' ss Seq
ATGCCAGGTGTCTTCCGCAGAGC
3' ss Score
7.66
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
ACGTGGACGAGTGCCAGGACCCGGCAGCCTGCCGCCCTGGCCGCTGCGTCAACCTGCCGGGCTCCTACCGCTGCGAGTGTCGCCCGCCCTGGGTGCCCGGGCCCTCCGGCCGCGATTGCCAGCTCCCCGAGAGCCCGGCCG
Seq A exon
AGCGTGCCCCGGAGCGGCGCGACGTGTGCTGGAGCCAGCGCGGAGAGGACGGCATGTGCGCTGGCCCCCTGGCCGGGCCTGCCCTCACCTTCGACGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGCGCCCAATGCCGACCGTGCCCGCCGCGCGGCGCGG
Seq C2 exon
GGTCCCATTGCCCGACATCGCAGAGCGAGAGCAATTCCTTCTGGGACACAAGCCCCCTGCTGTTGGGGAAGCCCCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168056-'29-31,'29-30,30-31=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.055 C2=0.536
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=83.3)
A:
PF106004=PDZ_assoc=PD(8.7=7.3),PF0068312=TB=PU(82.2=67.3)
C2:
PF0068312=TB=PD(14.0=21.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACGAGTGCCAGGACC
R:
GCTTCCCCAACAGCAGGG
Band lengths:
210-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)