RnoEX0051390 @ rn6
Exon Skipping
Gene
ENSRNOG00000020813 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:RGD Symbol;Acc:62057]
Coordinates
chr1:221114313-221115177:+
Coord C1 exon
chr1:221114313-221114450
Coord A exon
chr1:221114860-221115021
Coord C2 exon
chr1:221115097-221115177
Length
162 bp
Sequences
Splice sites
3' ss Seq
ATGTGGGTCCTGTTCCACAGAGC
3' ss Score
8.59
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
ATGTGGATGAGTGCTTGGATGAGTCCAACTGCAGGAACGGAGTGTGTGAGAACACACGCGGAGGCTACCGCTGCGCCTGCACACCGCCCGCAGAGTACAGCCCCGCGCAGCGCCAGTGTCTGAGCCCGGAGGAGATGG
Seq A exon
AGCATGGCCCAGAGCGACGAGAAGTATGCTGGGGCCAGCGCGGAGAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTCGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCGCGTGGCACTG
Seq C2 exon
GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCTTTCTGGGATACAAGTCCCCTGCTACTGGGGAAGTCTCCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020813-'30-43,'30-42,33-43
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.064 C2=0.500
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=85.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0068312=TB=PU(92.5=67.3)
C2:
PF0068312=TB=PD(5.0=7.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGATGAGTGCTTGGATGA
R:
CTCGTGGAGACTTCCCCAGTA
Band lengths:
218-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]