BtaEX6103821 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044032 | KDM2A
Description
lysine (K)-specific demethylase 2A [Source:HGNC Symbol;Acc:HGNC:13606]
Coordinates
chr29:45792945-45794798:+
Coord C1 exon
chr29:45792945-45793051
Coord A exon
chr29:45793389-45793482
Coord C2 exon
chr29:45794645-45794798
Length
94 bp
Sequences
Splice sites
3' ss Seq
TACTGCTTTTTTTGGGTCAGGTA
3' ss Score
7.05
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTGGATTTCATTGACTGGGTAGACAATATGTGGCCAAGGCATTTGAAAGAAAGTCAGACTGAATCAACAAATGCCATCTTGGAGATGCAGTATCCTAAAGTGCAGAA
Seq A exon
GTACTGTCTGATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGACTTCGGTGGTACCTCGGTTTGGTATCATATCCATCAAGGGGGAAAG
Seq C2 exon
GTCTTCTGGCTCATCCCCCCTACAGCCCACAACCTGGAGCTGTACGAGAATTGGCTGCTGTCAGGGAAACAGGGAGACATCTTTCTGGGTGACCGGGTATCAGATTGCCAACGCATTGAGCTCAAGCAGGGCTATACCTTCGTCATTCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044032-'10-13,'10-10,11-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0237317=JmjC=PU(29.7=93.8)
C2:
PF0237317=JmjC=FE(50.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCCAAGGCATTTGAAAG
R:
TGATACCCGGTCACCCAGAAA
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]