RnoEX0046398 @ rn6
Exon Skipping
Gene
ENSRNOG00000019145 | Kdm2a
Description
lysine demethylase 2A [Source:RGD Symbol;Acc:1309419]
Coordinates
chr1:219598365-219600457:-
Coord C1 exon
chr1:219600351-219600457
Coord A exon
chr1:219599837-219599930
Coord C2 exon
chr1:219598365-219598518
Length
94 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTCTCTTTGGGTCAGGTA
3' ss Score
7.2
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACTGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA
Seq A exon
GTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG
Seq C2 exon
GTCTTCTGGCTCATCCCCCCTACAGCCCACAACCTGGAGCTGTACGAGAATTGGCTGCTATCAGGGAAACAGGGAGACATCTTTCTGGGTGACCGGGTGTCAGATTGCCAACGAATTGAGCTCAAGCAGGGCTATACCTTCGTTATTCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019145-'14-12,'14-9,15-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
NO
A:
PF0237317=JmjC=PU(29.7=93.8)
C2:
PF0237317=JmjC=FE(50.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATAACATGTGGCCAAGGCA
R:
CCGGTCACCCAGAAAGATGTC
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]