DreEX6057700 @ danRer10
Exon Skipping
Gene
ENSDARG00000078133 | kdm2ab
Description
lysine (K)-specific demethylase 2Ab [Source:ZFIN;Acc:ZDB-GENE-101007-5]
Coordinates
chr14:21463828-21464551:+
Coord C1 exon
chr14:21463828-21463934
Coord A exon
chr14:21464047-21464140
Coord C2 exon
chr14:21464398-21464551
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATTATACATGTGTTTATCAGGTA
3' ss Score
6.69
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTTGATATGATTGACTGGGTGGACAATATGTGGCCGCGGCATCTTAAAGAAAGACAAAGAGACTCCACTAATGCCATTACAGACATGCAGTACCCCAAAGTACAGAA
Seq A exon
GTATTGTCTGATGAGCGTCGAGGGATGCTTTACAGATTTCCATATAGATTTTGGAGGCACATCAGTCTGGTATCACATCCACAAGGGAGGGAAG
Seq C2 exon
GTTTTCTGGCTGATCCCTCCCACACCTCAGAACCTGGAGCTTTATGAGAACTGGGTGTTGTCTGCTAAACAAGGCGACATCTTTCTTGGGGATAAAGCCTCTATGTGCCAACGGATTGAATTGAAACAAGGCTACACCTTTATGATCCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078133-'16-9,'16-8,17-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0237317=JmjC=PU(29.7=93.8)
C2:
PF0237317=JmjC=FE(50.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCGGCATCTTAAAGAAAG
R:
TCCCCAAGAAAGATGTCGCCT
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]