MmuEX6030466 @ mm9
Exon Skipping
Gene
ENSMUSG00000054611 | Kdm2a
Description
lysine (K)-specific demethylase 2A [Source:MGI Symbol;Acc:MGI:1354736]
Coordinates
chr19:4350177-4352374:-
Coord C1 exon
chr19:4352268-4352374
Coord A exon
chr19:4351737-4351830
Coord C2 exon
chr19:4350177-4350330
Length
94 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTCTCTTTGGGTCAGGTA
3' ss Score
7.2
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTGGATTTCATTGACTGGGTAGATAACATGTGGCCAAGGCACTTGAAAGAAAGTCAGACAGAATCAACAAATGCCATCTTAGAGATGCAGTACCCTAAAGTGCAAAA
Seq A exon
GTACTGTCTAATGAGTGTTCGAGGCTGCTATACTGACTTCCATGTGGATTTTGGAGGTACTTCTGTTTGGTATCACATCCACCAAGGTGGAAAG
Seq C2 exon
GTCTTCTGGCTCATCCCCCCTACAGCCCACAACCTGGAGCTGTACGAGAATTGGCTGCTATCAGGGAAACAGGGAGACATCTTTCTGGGTGACCGGGTGTCAGATTGCCAACGAATTGAGCTCAAGCAGGGCTATACCTTCGTTATTCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054611-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0237317=JmjC=PU(29.7=93.8)
C2:
PF0237317=JmjC=FE(50.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATAACATGTGGCCAAGGCA
R:
CCGGTCACCCAGAAAGATGTC
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: