GgaEX6047560 @ galGal3
Exon Skipping
Gene
ENSGALG00000013286 | KDM2A
Description
NA
Coordinates
chrUn_random:27629663-27633093:-
Coord C1 exon
chrUn_random:27632987-27633093
Coord A exon
chrUn_random:27632266-27632359
Coord C2 exon
chrUn_random:27629663-27629816
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTTCTCATCTTGGTTCCCAGGTA
3' ss Score
9.53
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGGATTTGATTGACTGGGTTGATAACATGTGGCCCAGGCACCTGAAGGAGAGTCAGACAGAGTCTACGAATGCTATTCTAGAGATGCAGTATCCAAAAGTACAGAA
Seq A exon
GTACTGTCTGATGAGTGTCAAGGGCTGCTACACCGATTTCCATGTGGATTTTGGTGGTACTTCTGTGTGGTACCACATCCACCGAGGAGGAAAG
Seq C2 exon
ATCTTCTGGTTGATCCCTCCTACACCCCAGAACCTGGAGCTCTATGAAAACTGGCTTCTCTCAGGGAAGCAGGGAGACATATTTCTTGGAGATAGGGTGTCAGAGTGCCAGCGCATCGAGCTCAAGCAGGGCTATACGTTTGTCATCCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013286-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0237317=JmjC=PU(29.7=93.8)
C2:
PF0237317=JmjC=FE(50.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATAACATGTGGCCCAGGC
R:
ATGTCTCCCTGCTTCCCTGAG
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]