BtaEX6103970 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000292 | TCIRG1
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr29:46222221-46223038:+
Coord C1 exon
chr29:46222221-46222338
Coord A exon
chr29:46222493-46222670
Coord C2 exon
chr29:46222754-46223038
Length
178 bp
Sequences
Splice sites
3' ss Seq
GCTCCCTCCCTCACCTGCAGAAC
3' ss Score
10.88
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
TTTGTCCTGTCCGAGGTGTTCATGCACCAGGCCATCCACACCATCGAGTTCTGCCTCGGCTGCATCTCCAACACGGCCTCCTACTTGCGCCTCTGGGCCCTAAGCCTGGCCCACGCCC
Seq A exon
AACTGTCGGAGGTCCTGTGGGCCATGGTGATGCGAGTTGGCTTGGGCCTGGGTGGCAAGATGGGCGTGGAGGCCCTGGTGCTGGTCCCCGTCTTTGCCGCCTTCGCCGTGATGACCGTGGCCATCCTGCTGGTGATGGAGGGGCTCTCGGCCTTCCTGCACGCGCTGCGGCTGCACTG
Seq C2 exon
GGTGGAGTTCCAGAACAAGTTCTACTCGGGCTCCGGCTACAAGCTGAGCCCCTTCACCTTTGCCGTGGAGGATGAGTAATGCCCACGACCTGCCCTTACCGTGCCAAGCAGGAAACAAATTCTGAGGCGGCAGACTTCCCTGGTGGTTCAGCAGTTAAGACCTCATGCTTCCAGTACAGGGATGGTGCTTCCGATACAGTTTGATCCCTGGTCAGGGAACTAAGATCCCACATGCCACACGGTGCGACTGAGTTCAAAAAACAATAAAGATGAAGAAGGCCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000292-'27-30,'27-29,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(9.6=100)
A:
PF0149614=V_ATPase_I=FE(14.6=100)
C2:
PF0149614=V_ATPase_I=PD(5.2=77.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTGTCCGAGGTGTTCAT
R:
AGTCTGCCGCCTCAGAATTTG
Band lengths:
252-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]