GgaEX1057770 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr5:98171-98899:+
Coord C1 exon
chr5:98171-98293
Coord A exon
chr5:98382-98553
Coord C2 exon
chr5:98651-98899
Length
172 bp
Sequences
Splice sites
3' ss Seq
TCCCCCCACCCCATGGGCAGAGC
3' ss Score
5.68
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
AGCACATGGACTTCTCTTAGGTCTTCATGCACCAAGCCATCCACACCATCGAGTACTGCCTGGGCTGCATCTCCAACACCGCGTCCTACCTGCGGCTCTGGGCGCTCAGCCTTGCCCACGCAC
Seq A exon
AGCTCTCTGAGGTGCTGTGGACCATGGTGATGCACAATGGCTTTGTGGGGCTGAGCTACGTTGGTGGTGTCGTGCTGGTGCCCGTCTTCGCCGCCTTCGCCGTGCTGACCGTGGCCATCCTGCTGGTGATGGAGGGGCTCTCCGCCTTCCTGCATGCCCTTCGCCTGCACTG
Seq C2 exon
GGTGGAGTTTCAGAATAAGTTTTACGTGGGTGCTGGCTACAAGCTGTGCCCCTTCACCTTCGCGCCCGATCCCTGGGAGTAACTGAACTGTGCTGCATGGACCTGGGGGGCTCCGCGTTGCTGGGACCCCCCAGTGCCATGTGGCGGGGGGTGGGTTGGCTGCATGCTCCCTGGCCCCGTCCTCTCCTTTTCCAAGCCTAGAGGTTTCTGCAGTGAATAAAGCCCCCCGGCTCCCTGTCTGTGTCCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018754-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(28.8=97.0)
A:
PF0149614=V_ATPase_I=FE(51.4=100)
C2:
PF0149614=V_ATPase_I=PD(18.9=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCAACACCGCGTCCTA
R:
GCTTGGAAAAGGAGAGGACGG
Band lengths:
252-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]