HsaEX0064214 @ hg38
Exon Skipping
Gene
ENSG00000110719 | TCIRG1
Description
T-cell immune regulator 1, ATPase H+ transporting V0 subunit a3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr11:68050137-68050895:+
Coord C1 exon
chr11:68050137-68050254
Coord A exon
chr11:68050487-68050664
Coord C2 exon
chr11:68050741-68050895
Length
178 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTCCTTTGCTTGCAGAGC
3' ss Score
10.7
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CTCGTCCCCTCCGAGGTGCTCATGCACCAGGCCATCCACACCATCGAGTTCTGCCTGGGCTGCGTCTCCAACACCGCCTCCTACCTGCGCCTGTGGGCCCTGAGCCTGGCCCACGCCC
Seq A exon
AGCTGTCCGAGGTTCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCCTGGGCCGGGAGGTGGGCGTGGCGGCTGTGGTGCTGGTCCCCATCTTTGCCGCCTTTGCCGTGATGACCGTGGCTATCCTGCTGGTGATGGAGGGACTCTCAGCCTTCCTGCACGCCCTGCGGCTGCACTG
Seq C2 exon
GGTGGAATTCCAGAACAAGTTCTACTCAGGCACGGGCTACAAGCTGAGTCCCTTCACCTTCGCTGCCACAGATGACTAGGGCCCACTGCAGGTCCTGCCAGACCTCCTTCCTGACCTCTGAGGCAGGAGAGGAATAAAGACGGTCCGCCCTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110719-'58-52,'58-51,61-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(78.0=100)
A:
PF0149614=V_ATPase_I=FE(7.4=100)
C2:
PF0149614=V_ATPase_I=PD(2.6=77.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCATCCACACCATCGAG
R:
CAGGGCGGACCGTCTTTATTC
Band lengths:
242-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development