DreEX0077871 @ danRer10
Exon Skipping
Gene
ENSDARG00000105142 | tcirg1b
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3b [Source:ZFIN;Acc:ZDB-GENE-040426-2022]
Coordinates
chr14:16471655-16484297:-
Coord C1 exon
chr14:16484177-16484297
Coord A exon
chr14:16483011-16483182
Coord C2 exon
chr14:16471655-16472478
Length
172 bp
Sequences
Splice sites
3' ss Seq
TATTTTTCTTCTTCTTTTAGAGT
3' ss Score
10.68
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GAGTTTGATACAGCGAACGTCTTCATGCACCAGGCCATTCACACTATTGAGTATTGTCTTGGGTGTATCTCCAACACGGCCTCATACCTGCGGCTCTGGGCCCTCAGTCTGGCTCATGCAC
Seq A exon
AGTTATCCGAGGTGCTGTGGACGATGGTAATGCGACAATCCTTCGGTCAGCTCAGTTATGTGGGCTCAGTCATGGCGGCGCTTGTTTTTGTTGGCTTTGCTGTGTTAACCGTGTCTATCCTGCTCGTCATGGAAGGGCTGTCTGCTTTTCTACATGCACTTCGACTTCACTG
Seq C2 exon
GGTGGAGTTTCAGAATAAATTTTACAGTGGAACAGGGTACAAGCTCACTCCGTTTGACTTCTCATTCGGTGCTTTCTCTACAAAGTGACCTTCAGTATGAACCAATGGTCTTAGAATGGAAAAAAAAGAAGAGTTATGGAGTTATTTTGCTGGGGGCACAAATCGCATTTTAAAATGTATCATTCAAGGATCTTTCATTTTTTATACTTTATTTTGACCACCACTATACAAAAAAACTGTACCTGAAAATTTGAATGTGAAAAGCTTTGTTATGAATTCACATACATATCTTTAAAATGTTTAAGTACTTGATACGTGCCACATAGAGTCTTTTAGTTGAATGATTTTATTAATTAAGTTGAATGATTTGGTTAAGGTCTTGAGCCCAAAAAAAATAAAGTTCTTTTAACTCTCCATAATCAGATGTGTTTACTGTATAACCACTGATCCATTATGACATCAACTATATAATTATAGTTTGGGCTGCAAGTTCAAGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105142-'24-34,'24-30,25-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.2=100)
A:
PF0149614=V_ATPase_I=FE(7.4=100)
C2:
PF0149614=V_ATPase_I=PD(2.7=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCATGCACCAGGCCATTCA
R:
GCCCCCAGCAAAATAACTCCA
Band lengths:
258-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]