MmuEX0046729 @ mm9
Exon Skipping
Gene
ENSMUSG00000001750 | Tcirg1
Description
T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 [Source:MGI Symbol;Acc:MGI:1350931]
Coordinates
chr19:3896050-3896721:-
Coord C1 exon
chr19:3896604-3896721
Coord A exon
chr19:3896270-3896447
Coord C2 exon
chr19:3896050-3896192
Length
178 bp
Sequences
Splice sites
3' ss Seq
ATTCCCTTATTTGTGTGCAGAGC
3' ss Score
7.91
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC
Seq A exon
AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG
Seq C2 exon
GGTGGAGTTCCAGAACAAGTTCTATTCAGGCACCGGCTACAAGCTCAGCCCCTTCACCTTCACTGTGGACAGTGACTAGCTACCCACTGCAATCCCTGCTTCTCCGAAGTGGGACAGGAATAAAGAGCTGGCTGGCCCAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001750-'32-29,'32-28,34-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.8=100)
A:
PF0149614=V_ATPase_I=FE(7.3=100)
C2:
PF0149614=V_ATPase_I=PD(2.6=77.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCTGAGATCTTCATGCACC
R:
GGCCAGCCAGCTCTTTATTCC
Band lengths:
250-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: