DreEX6032764 @ danRer10
Exon Skipping
Gene
ENSDARG00000016835 | tcirg1a
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3a [Source:ZFIN;Acc:ZDB-GENE-090311-31]
Coordinates
chr1:44170905-44175370:-
Coord C1 exon
chr1:44175250-44175370
Coord A exon
chr1:44174984-44175155
Coord C2 exon
chr1:44170905-44171589
Length
172 bp
Sequences
Splice sites
3' ss Seq
TGTGTATTTGTGTGTGTTAGAGC
3' ss Score
7
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GAGTTTGAGTGGACGGAGGTGTTCATGCAGCAGGCCATCCATACTATAGAGTACTGTCTGGGCTGCATCTCTAACACTGCCTCATACCTCCGCCTTTGGGCCCTCAGCCTCGCTCATGCAC
Seq A exon
AGCTGGCGGAAGTCCTCTGGGTGATGGTAATGAGGATTTCCTTGTCGTGGCAAGGCTATGTTGGCTCTGTGGTTCTGTCAGTGGTTTTCTCCCTCTTCGCCACGCTCACCGTCTCCATCCTGCTGGTTATGGAGGGACTGTCGGCCTTCCTGCATGCACTGCGGCTGCACTG
Seq C2 exon
GGTGGAGTTTCAGAATAAATTCTACCGCGGATCTGGATACAAGTTCAACCCTTTCTCCTTTGAATCAATCCAGCGTTTGGAGTGAATGTAAATACTACATGTAAAGATGCTTTTATACTTCATTTTGAAGCTGAATGTGTTTCTCAAGTATTAAAAAGCAATCAAATGGATAGTTCATCCTAAATTAAAAACGAAAAAGTATTCCAAACCGGTGAAGTTTGTTGTAATATAACAAAATAAGCTGTTTTGATGCTGTCCAAAGACATGCGCTGTAGGCGAATTGAATAAGCTAAATTGGCCGCAGTGTATGTGTGTGAATCAGTGTGTATGGATGTTTCCGAGTGTTGGATTGCAACTTGTAAGGCATCTGCAACATACGTTTCAAAATGAATGAATGGTGATGTTTTGAGAAATGTTCATTTAACACAGTCAATACACGTCACCACATGAGGATTTTTTTATTTTAAGTTGAACTGTCCCTTTTATTATTTATTTGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016835-'22-24,'22-21,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(5.1=100)
A:
PF0149614=V_ATPase_I=FE(7.2=100)
C2:
PF0149614=V_ATPase_I=PD(2.7=72.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCATACCTCCGCCTTTG
R:
CACCGGTTTGGAATACTTTTTCGT
Band lengths:
257-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]