BtaEX6104001 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005903 | LRP5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N1K8]
Coordinates
chr29:46551824-46556117:+
Coord C1 exon
chr29:46551824-46552014
Coord A exon
chr29:46552646-46552855
Coord C2 exon
chr29:46555992-46556117
Length
210 bp
Sequences
Splice sites
3' ss Seq
GGCGCTTATCCCTCTCGCAGGGG
3' ss Score
8.72
5' ss Seq
TCTGTACGT
5' ss Score
4.47
Exon sequences
Seq C1 exon
GTACCTGTACTTCACCAACATGCAGGACCGTGCCGCCAAGATCGAGCGCGCCGCCCTGGACGGCACGGAGCGCGAGGTCCTCTTCACCACAGGCCTCATCCGCCCCGTGGCCCTCGTGGTGGACAACACGCTGGGCAAGCTCTTCTGGGTGGACGCCGACCTGAAGCGCATCGAGAGCTGTGACCTGTCAG
Seq A exon
GGGCCAACCGCCTGACCCTGGAGGATGCCAACATCGTGCAGCCCGTGGGCCTGACCGTGCTGGGCAAGCACCTCTACTGGATTGACCGCCAGCAGCAGATGATCGAGCGTGTGGACAAGACCACGGGGGACGCACGGACACGAGTCCAGGGCCGTGTTGCGCACCTGACCGGCATTCATGCTGTGGAGGACATCAGCCTGGAGGAGTTCT
Seq C2 exon
CAGCCCACCCCTGTGCCCGCGACAATGGAGGCTGTTCTCACATCTGTGTCGCCAAGGGCGATGGGACGCCGCGCTGCTCATGTCCGGTCCACCTCGTGCTCCTGCAGAACCTGCTGACTTGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005903-'24-27,'24-26,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.070 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=66.2),PF0005812=Ldl_recept_b=PU(48.7=29.2)
A:
PF0005812=Ldl_recept_b=PD(48.7=26.8)
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCACCAACATGCAGGACC
R:
ACCACAAGTCAGCAGGTTCTG
Band lengths:
308-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]