GgaEX1033960 @ galGal4
Exon Skipping
Gene
ENSGALG00000006998 | LRP5
Description
low-density lipoprotein receptor-related protein 5 precursor [Source:RefSeq peptide;Acc:NP_001012915]
Coordinates
chr5:15808941-15812974:+
Coord C1 exon
chr5:15808941-15809131
Coord A exon
chr5:15810225-15810434
Coord C2 exon
chr5:15812849-15812974
Length
210 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTCTGTTGATCTCAGGTG
3' ss Score
8.29
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GTACATGTATTTCACCAACATGCAAGAGCGAGCTCCCAAGATTGAACGTGCAGCCCTTGATGGCACAGAGAGGGAAGTGCTTTTCACAACTGGGTTGATCCGACCAGTAGCACTGGTGATTGACAACAAACTCGGAAAGCTTTTCTGGGTGGACGCAGATCTGAAGCGCATCGAAAGCTGTGACTTGTCAG
Seq A exon
GTGCTAACCGTGTGACTCTGGAGGACTCCAACATCCTTCAGCCAATGGGCCTGACTGTGCTGGGGAATCACCTGTACTGGATTGATCGGCAGCAGCAGATGATTGAGAGAGTGGAGAAAACTAATGGGTACAAAAGGACTAGAATTCAAGGCCGAATTGCTCACCTAACAGGCATTCATGCTGTGGAGGAACTTGATATGGAGGAATTCT
Seq C2 exon
CTGCACATCCGTGCTCCCGTGACAATGGTGGGTGCTCACACATCTGCATTGCCAAAGGGGATGGGACTCCAAGATGTTCGTGTCCAGAGCACCTTGTGCTCCTGCAGAATCTCTTAACGTGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006998-'27-25,'27-24,28-25
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=66.2),PF0005812=Ldl_recept_b=PU(48.7=29.2)
A:
PF0005812=Ldl_recept_b=PD(48.7=26.8)
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACCAACATGCAAGAGCGA
R:
ACGTTAAGAGATTCTGCAGGAGC
Band lengths:
301-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]