DreEX6101266 @ danRer10
Exon Skipping
Gene
ENSDARG00000006921 | lrp5
Description
low density lipoprotein receptor-related protein 5 [Source:ZFIN;Acc:ZDB-GENE-050518-2]
Coordinates
chr25:10554910-10560847:-
Coord C1 exon
chr25:10560657-10560847
Coord A exon
chr25:10556903-10557112
Coord C2 exon
chr25:10554910-10555035
Length
210 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTGTTTGCCTGTCAGGTG
3' ss Score
10.45
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
CTACATGTACTTCACTACTGTTCAGGAGCGTTCTGCTAAAATTGAAGGTGCCTCTTTGGACGGGACGGAGCGTGAATCTCTGTTTACGACCAGTTTGATCCGGCCCGTGGCTCTTGCTTTGGACAATAAGCTGGGGAAGCTGTTTTGGGTGGATGCAGATCTGAAACGCATCGAGAGCAGTGACCTGTCTG
Seq A exon
GTGCGAATCGGATCGTCCTCCAGGACTCAAACATCCTCCAGCCAGTGGGTTTGACCGTTTTGGGGGATCATCTGTACTGGATCGACAAACAGCAGCAGATGATCGAGCGCGTGGACAAGCTGACCGGAGAGAAGAGGACCCGCATTCAGGGCCGACTGCAGTACCTGACCGGCATCCACGCAGTGCAGTACATGGAGACAGACGAGTTCG
Seq C2 exon
CGACCCACCCGTGTTCCCGTGACAACGGAGGCTGTTCACACATCTGCATCGCTAAAGGTGACGGGACGCCTCGCTGCTCGTGTCCCATGCATCTGGTGCTGCTTCAAAACCTGCTCAGCTGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006921-'18-23,'18-22,19-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=66.2),PF0005812=Ldl_recept_b=PU(48.7=29.2)
A:
PF0005812=Ldl_recept_b=PD(48.7=26.8)
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGTTCAGGAGCGTTCTGC
R:
TGAGCAGGTTTTGAAGCAGCA
Band lengths:
293-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]