RnoEX0050745 @ rn6
Exon Skipping
Gene
ENSRNOG00000015911 | Lrp5
Description
LDL receptor related protein 5 [Source:RGD Symbol;Acc:1309329]
Coordinates
chr1:218832599-218838270:-
Coord C1 exon
chr1:218838080-218838270
Coord A exon
chr1:218836671-218836880
Coord C2 exon
chr1:218832599-218832724
Length
210 bp
Sequences
Splice sites
3' ss Seq
AACCTTTATGTTAACCCCAGGGG
3' ss Score
6.34
5' ss Seq
TCTGTATGT
5' ss Score
3.86
Exon sequences
Seq C1 exon
GTACATGTACTTTACCAACATGCAGGACCATGCTGCCAAGATTGAGCGAGCCTCCCTGGATGGCACGGAGCGTGAGGTTCTCTTCACCACCGGCCTTATCCGTCCTGTGGCCCTTGTGGTGGACAATGCCCTGGGCAAGCTCTTCTGGGTGGATGCAGACCTAAAGCGCATTGAAAGCTGCGACCTCTCAG
Seq A exon
GGGCCAACCGCCTGACCCTGGAAGATGCCAACATCGTGCAGCCAGTAGGTCTGACGGTGCTGGGGAGGCACCTCTACTGGATCGACCGCCAGCAGCAGATGATTGAGCGTGTGGAGAAGACCACTGGGGACAAGAGGACTAGGGTTCAGGGCCGTGTCACCCACCTGACAGGCATCCATGCTGTGGAGGAAGTCAGCCTGGAGGAGTTCT
Seq C2 exon
CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCATATCTGCATCGCCAAGGGTGATGGGACACCGCGCTGCTCATGCCCAGTCCACCTCGTGCTCCTGCAGAACCTGCTGACTTGTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015911-'29-27,'29-26,30-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.169 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=WD(100=66.2),PF0005812=Ldl_recept_b=PU(48.7=29.2)
A:
PF0005812=Ldl_recept_b=PD(48.7=26.8)
C2:
PF146701=FXa_inhibition=WD(100=86.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCATGCTGCCAAGATTG
R:
ACCACAAGTCAGCAGGTTCTG
Band lengths:
293-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]