BtaEX6105142 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15967605-15980763:-
Coord C1 exon
chr28:15980665-15980763
Coord A exon
chr28:15973492-15973689
Coord C2 exon
chr28:15967605-15967703
Length
198 bp
Sequences
Splice sites
3' ss Seq
CAAGTGATTTGTGTTGACAGAAT
3' ss Score
4.3
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
AGCGGGCTAACGCCACTGCATGTAGCTGCACATTATGATAATCAGAAAGTGGCTCTTCTGCTTCTGGACCAAGGAGCCTCACCCCACGCGGCTGCAAAG
Seq A exon
AATGGTTATACGCCACTGCACATCGCTGCCAAAAAGAACCAGATGGACATAGCGACGACTCTGCTGGAATATGGTGCTGATGCAAATGCAGTTACCCGGCAAGGAATTGCTTCTGTCCATCTTGCAGCTCAGGAAGGACATGTGGACATGGTGTCACTGCTCCTCAGCAGAAATGCTAATGTGAACTTGAGCAATAAG
Seq C2 exon
AGTGGCCTGGCCCCACTCCATTTGGCTGCGCAAGAAGACAGAGTGAATGTGGCCGAAGTCCTTGTAAACCAGGGGGCACATGTGGACGCCCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052-'17-21,'17-18,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(34.4=100)
A:
PF127962=Ank_2=PD(33.3=47.0),PF127962=Ank_2=PU(29.0=40.9)
C2:
PF127962=Ank_2=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACGCCACTGCATGTAGCTG
R:
CTTTGTCTGGGCGTCCACATG
Band lengths:
191-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]