HsaEX1003658 @ hg38
Exon Skipping
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60181329-60196243:-
Coord C1 exon
chr10:60196145-60196243
Coord A exon
chr10:60186715-60186912
Coord C2 exon
chr10:60181329-60181427
Length
198 bp
Sequences
Splice sites
3' ss Seq
CAAGTGATTTGTGTTGACAGAAT
3' ss Score
4.3
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
AGCGGGCTAACACCACTGCATGTAGCTGCACATTACGATAATCAGAAAGTGGCCCTTCTGCTTTTGGACCAAGGAGCCTCACCTCACGCAGCCGCAAAG
Seq A exon
AATGGTTATACGCCACTGCACATCGCTGCCAAAAAGAACCAGATGGACATAGCGACAACTCTGCTGGAATATGGTGCTGATGCCAACGCAGTTACCCGGCAAGGAATTGCTTCCGTCCATCTCGCAGCTCAGGAAGGGCACGTGGACATGGTGTCGCTGCTCCTCGGTAGAAATGCGAATGTGAACCTGAGCAATAAG
Seq C2 exon
AGCGGCCTGACCCCACTCCATTTGGCTGCTCAAGAAGATCGAGTGAATGTGGCAGAAGTCCTCGTAAACCAAGGGGCTCATGTGGACGCCCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-'57-52,'57-51,60-52
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.015 C2=0.085
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(34.4=100)
A:
PF127962=Ank_2=PD(33.3=47.0),PF127962=Ank_2=PU(29.0=40.9)
C2:
PF127962=Ank_2=PD(44.9=93.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTAACACCACTGCATGTA
R:
CTTTGTCTGGGCGTCCACATG
Band lengths:
195-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains