DreEX0013132 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7686272-7694809:-
Coord C1 exon
chr12:7694711-7694809
Coord A exon
chr12:7686668-7686865
Coord C2 exon
chr12:7686272-7686370
Length
198 bp
Sequences
Splice sites
3' ss Seq
TCCCTTGTTTTCCTCTTTAGAAT
3' ss Score
11.67
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
AGTGGACTAACACCACTGCATGTTGCTGCACACTATGATAACCAGAAAGTGGCTCTTCTTCTGTTGGACCAAGGAGCGTCTCCACATGCAGCAGCAAAG
Seq A exon
AATGGCTATACTCCACTGCACATCGCTGCCAAGAAGAACCAGATGGAGATCGCCACCACGCTGCTAGAGTACGGAGCCGATACCAACGCCGCCACACGGCAGGGCATCAGTCCTCTGCATCTGGCAGCACAGGAGGGCAATGTGGACATGGTGACACTGCTGCTCGCCCGCGAAGCTGCCGTCAGTCTGGGAAACAAG
Seq C2 exon
AGTGGACTGACCCCTATTCACCTGGCGGCTCAAGAGGACAGGGTCAATGTATCTGAAGTGCTGGTTAATCATGGAGCCACTGTGGACCCCGAGACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582-'25-21,'25-20,26-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.076 C2=0.152
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=100.0)
A:
PF127962=Ank_2=PD(33.3=47.0),PF0002325=Ank=WD(100=50.0)
C2:
PF127962=Ank_2=PU(29.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTAACACCACTGCATGT
R:
CTTAGTCTCGGGGTCCACAGT
Band lengths:
196-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]