GgaEX1065943 @ galGal4
Exon Skipping
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8416843-8422468:+
Coord C1 exon
chr6:8416843-8416941
Coord A exon
chr6:8420218-8420415
Coord C2 exon
chr6:8422370-8422468
Length
198 bp
Sequences
Splice sites
3' ss Seq
GAAGTGCTTTCTGTTGACAGAAC
3' ss Score
5.64
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AGCGGTTTAACACCACTGCATGTAGCTGCACACTACGATAATCAAAAAGTGGCACTCCTACTGTTGGACCAGGGAGCTTCACCTCACGCATCTGCCAAG
Seq A exon
AACGGCTATACACCACTACACATAGCTGCCAAGAAAAACCAGATGGACATAGCGACTACACTGCTGGAATATGGTGCTGATGCCAATGCTGTAACCAGACAGGGTATTGCCCCTGTACATCTGGCCTCTCAGGACGGCCACGTGGACATGGTGTCCTTACTTCTTACTAGAAATGCTAATGTAAATCTCAGCAACAAG
Seq C2 exon
AGTGGACTGACACCATTGCACTTGGCTGCTCAAGAGGACAGAGTCAATGTAGCAGAGGTTCTTGTTAACCAAGGAGCTGCTGTTGATGCTCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'38-24,'38-23,39-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=0.061 C2=0.030
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(34.4=100)
A:
PF127962=Ank_2=PD(33.3=47.0),PF127962=Ank_2=PU(29.0=40.9)
C2:
PF127962=Ank_2=PU(29.0=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTAACACCACTGCATGTAGC
R:
TTTGTCTGAGCATCAACAGCAG
Band lengths:
194-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]