RnoEX6062479 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20334927-20348872:+
Coord C1 exon
chr20:20334927-20335025
Coord A exon
chr20:20347582-20347779
Coord C2 exon
chr20:20348774-20348872
Length
198 bp
Sequences
Splice sites
3' ss Seq
CGAGTGATTGGTTTTGACAGAAC
3' ss Score
3.69
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AGCGGGCTAACTCCACTGCATGTAGCAGCACATTACGATAATCAGAAAGTGGCCCTTCTGCTTTTGGACCAGGGAGCCTCACCCCACGCAGCTGCAAAG
Seq A exon
AACGGTTATACGCCACTGCACATCGCCGCCAAGAAGAACCAGATGGACATAGCCACGTCCCTGCTGGAGTACGGAGCTGATGCAAACGCCGTTACCCGGCAAGGGATTGCGTCCGTCCACCTTGCAGCGCAGGAAGGGCACGTGGACATGGTGTCGCTGCTCCTCAGTAGAAATGCGAACGTCAACTTGAGCAATAAG
Seq C2 exon
AGCGGCCTCACCCCACTCCACCTGGCGGCTCAAGAAGACCGAGTGAACGTGGCTGAGGTCCTTGTCAACCAAGGGGCCCACGTGGATGCACAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288-'27-35,'27-34,31-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.015 C2=0.061
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(34.4=100)
A:
PF127962=Ank_2=PD(33.3=47.0),PF127962=Ank_2=PU(29.0=40.9)
C2:
PF127962=Ank_2=FE(34.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCTAACTCCACTGCATG
R:
TTTGTCTGTGCATCCACGTGG
Band lengths:
195-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]