DreEX6053832 @ danRer10
Exon Skipping
Gene
ENSDARG00000061736 | ank3a
Description
ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
Coordinates
chr17:20752657-20755772:-
Coord C1 exon
chr17:20755674-20755772
Coord A exon
chr17:20752837-20753034
Coord C2 exon
chr17:20752657-20752755
Length
198 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTCTTTCTCTACAGAAT
3' ss Score
12.44
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AGTGGGTTAACACCGCTGCATGTGGCTGCTCACTATGATAATCAGAGAGTGGCTCTGTTACTGCTGGACCAGGGAGCATCTCCTCATTCTCCTGCCAAG
Seq A exon
AATGGCTACACGCCTCTCCACATTGCAGCAAAGAAGAATCAGTTGGAGATTGGGACGACGTTGCTGGAATATGGAGCGGAGTGTAACACAGTGACCCGCCAGGGCATCAGTCCACTCCACCTTGCCGCACAGGAGGGCAGTGTGGACCTCGTGTCTCTGCTGCTCACCAAACAAGCTAATGTGAACATGGGCAATAAG
Seq C2 exon
AACGGTCTCACGCCGCTGCACCTCGCTGCACAGGATGACAAAGCAGGTGTTACTGAAGTGCTGTTGAACCATGGAGCAGAAATTGACGCCCAAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061736-'22-23,'22-22,23-23=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.106 C2=0.242
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(34.4=100)
A:
PF127962=Ank_2=PD(33.3=47.0),PF0002325=Ank=WD(100=50.0)
C2:
PF127962=Ank_2=PU(29.3=81.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTTAACACCGCTGCAT
R:
GGTTTGGGCGTCAATTTCTGC
Band lengths:
194-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]