BtaEX6105390 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012380 | HK1
Description
Bos taurus hexokinase 1 (HK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001012668]
Coordinates
chr28:25885196-25893212:+
Coord C1 exon
chr28:25885196-25885344
Coord A exon
chr28:25891012-25891131
Coord C2 exon
chr28:25893117-25893212
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTGTGCTTCCTTCAGCTT
3' ss Score
9.3
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAAAGGGAGATTTCATCGCCCTGGATCTTGGCGGATCTTCCTTTCGAATTCTGCGGGTGCAGGTGAATCACGAGCAGAACCAGGCTGTTCATATGGAGTCTGAGGTTTACGACACCCCGGAGAACATCATGCATGGCAGTGGAAGCCAG
Seq A exon
CTTTTTGATCACGTCGCTGAGTGCCTGGGAGACTTCATGGAGAAAAAAAAAATCAAGGACAAGAAATTACCTGTGGGATTCACGTTTTCTTTCCCTTGTCGGCAATCCAGAATAGACGAG
Seq C2 exon
GCCATCCTGATCACCTGGACAAAGAGATTTAAAGCGAGCGGCGTGGAGGGAACTGATGTGGTGAAGCTGCTTGACAAAGCCATCAAAAAGCGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012380-'11-4,'11-3,12-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
PF0034916=Hexokinase_1=FE(18.9=100)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCATCGCCCTGGATCTTGG
R:
CCCACGCTTTTTGATGGCTTT
Band lengths:
235-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]