MmuEX6048711 @ mm10
Exon Skipping
Gene
ENSMUSG00000037012 | Hk1
Description
hexokinase 1 [Source:MGI Symbol;Acc:MGI:96103]
Coordinates
chr10:62296677-62304868:-
Coord C1 exon
chr10:62304720-62304868
Coord A exon
chr10:62299150-62299269
Coord C2 exon
chr10:62296677-62296772
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTCTGTACCTTCTAGCTT
3' ss Score
8.58
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
AAAAGGGGGATTTCATTGCACTGGATCTCGGCGGGTCTTCCTTTCGAATCCTGCGGGTGCAGGTGAACCACGAGAAGAGTCAGAACGTCAGCATGGAGTCTGAGGTCTACGACACCCCAGAGAACATCGTGCACGGCAGTGGAAGCCAG
Seq A exon
CTTTTTGATCACGTCGCTGAATGCCTCGGAGACTTCATGGAGAAAAGGAAGATCAAGGACAAGAAATTACCCGTGGGATTCACGTTTTCCTTCCCGTGCCGACAATCCAAAATAGACGAG
Seq C2 exon
GCCGTACTGATCACGTGGACAAAGCGGTTCAAAGCCAGTGGCGTGGAAGGGGCGGATGTGGTCAAGCTGCTGAATAAAGCCATTAAGAAGCGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037012-'25-28,'25-26,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.9=100)
A:
PF0034916=Hexokinase_1=FE(19.0=100)
C2:
PF0034916=Hexokinase_1=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGGATTTCATTGCACTGG
R:
CCCTCGCTTCTTAATGGCTTT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types