RnoEX0042008 @ rn6
Exon Skipping
Gene
ENSRNOG00000046891 | Hk1
Description
hexokinase 1 [Source:RGD Symbol;Acc:2796]
Coordinates
chr20:31938107-31946096:-
Coord C1 exon
chr20:31945948-31946096
Coord A exon
chr20:31941035-31941154
Coord C2 exon
chr20:31938107-31938202
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTCTGTGCCTTCTAGCTT
3' ss Score
9.01
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
AAAAGGGGGATTTCATTGCCCTGGATCTCGGCGGGTCTTCCTTTCGAATCCTGCGGGTGCAGGTGAACCACGAGAAGAACCAGAACGTCAGCATGGAGTCTGAGATCTACGACACCCCAGAGAACATCGTGCATGGCAGTGGAACCCAG
Seq A exon
CTTTTCGATCATGTCGCTGACTGCCTGGGAGACTTCATGGAGAAAAAGAAGATCAAGGACAAGAAGTTACCCGTGGGATTCACATTTTCCTTCCCCTGCCGACAATCCAAGATAGATGAG
Seq C2 exon
GCTGTACTGATCACGTGGACAAAGCGGTTCAAAGCCAGTGGCGTGGAAGGAGCGGATGTGGTCAAGTTGCTGAATAAAGCCATTAAGAAGCGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046891-'7-12,'7-10,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(24.4=100)
A:
PF0034916=Hexokinase_1=FE(19.4=100)
C2:
PF0034916=Hexokinase_1=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGGGATTTCATTGCCCTG
R:
CCCTCGCTTCTTAATGGCTTT
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]