DreEX6061132 @ danRer10
Exon Skipping
Gene
ENSDARG00000039452 | hk1
Description
hexokinase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2848]
Coordinates
chr13:22857496-22858223:-
Coord C1 exon
chr13:22858075-22858223
Coord A exon
chr13:22857716-22857835
Coord C2 exon
chr13:22857496-22857591
Length
120 bp
Sequences
Splice sites
3' ss Seq
CATTAGTATTATTCTTGCAGTTG
3' ss Score
4.26
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
AGAAAGGAGATTTCATCGCACTGGATCTGGGTGGCTCTAATTTCCGTATTCTGCGTGTAAAAGTGTCTCATGAGAAGAAACAGACAGTGCAGATGGAAAGTCAGATATACGAGACTCCAGAAGACATCATCCACGGCAGCGGATCCCGG
Seq A exon
TTGTTTGACCATGTTGCAGAATGTCTTGGAGACTTCATGGAGAAACAAAAAATTAAAGACAAGAAGCTTCCTGTGGGCTTCACCTTCTCATTTCCTTGTTCACAAAGCAAACTGGATGAG
Seq C2 exon
GCTGTTTTGCTGACATGGACGAAACGCTTCAAGGTTAATGGAGTAGAGGGAATGGATGTAGTGAAGCTTCTCAATAAGGCCATTAAAAAACGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039452-'3-7,'3-5,4-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
PF0034916=Hexokinase_1=FE(18.9=100)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGAGATTTCATCGCACTGG
R:
TTAATGGCCTTATTGAGAAGCTTCAC
Band lengths:
234-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]