GgaEX1028746 @ galGal4
Exon Skipping
Gene
ENSGALG00000004222 | HK1
Description
hexokinase-1 [Source:RefSeq peptide;Acc:NP_989432]
Coordinates
chr6:10477945-10482613:+
Coord C1 exon
chr6:10477945-10478093
Coord A exon
chr6:10481216-10481335
Coord C2 exon
chr6:10482518-10482613
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTGCTCTTCTTGCAGCTT
3' ss Score
11.42
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AGAAAGGAGATTTCATCGCTCTGGATCTCGGTGGTTCTTACTTTCGAATTCTGCGGGTGAAAGTATCGCATGAAAAGAAGCAGACGGTACAAATGGAAAGTGAAATTTATAATACACCTGAAGATATCATTCATGGCAGTGGGACACGG
Seq A exon
CTTTTTGATCATGTTGCTGAATGCCTGGGAGACTTTATGGAGAAACAACAAATCAAAGACAAGAAATTACCGGTTGGGTTTACCTTCTCTTTCCCGTGCCGACAATCTAAGCTGGATGAG
Seq C2 exon
GGCATTCTGATAACCTGGACGAAGCGCTTCAAAGCGAGCGGAGTGGAGGGAGCAGACGTTGTGAAGCTGCTTAACAAGGCCATCAAGAAACGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004222_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=FE(23.8=100)
A:
PF0034916=Hexokinase_1=FE(18.9=100)
C2:
PF0034916=Hexokinase_1=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGATTTCATCGCTCTGGA
R:
CCCACGTTTCTTGATGGCCTT
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]