BtaEX6106376 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011034 | ANGPT2
Description
Bos taurus angiopoietin 2 (ANGPT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098855]
Coordinates
chr27:4422700-4431456:-
Coord C1 exon
chr27:4431290-4431456
Coord A exon
chr27:4426456-4426586
Coord C2 exon
chr27:4422700-4423696
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTGCATGCTCATAGGAT
3' ss Score
8.78
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
GGATTCGGGAACCCTTCAGGTGAACACTGGCTGGGAAATGAGTTTGTTTCGCAGGTGACGGGTCAGAAACGCTACGTGCTGAAAATACACCTAAGAGACTGGGAAGGGAATGAGGCTTACTCGCTGTACGACCACTTCTATCTCTCGAATGAAGAACTCAACTACAG
Seq A exon
GATTCACCTTAAAGGCCTCACGGGGACAGCCGGCAAAATAAGCAGCATAAGCCAGCCAGGAAATGATTTTAGCACGAAGGATGCAGACAACGACAAATGCATTTGCAAATGCTCACAAATGCTCACAGGAG
Seq C2 exon
GCTGGTGGTTTGATGCCTGTGGTCCTTCCAACCTGAATGGAATGTACTACCCACAGAGGCAGAACACAAATAAGTTCAACGGTATTAAGTGGTACTACTGGAAGGGCTCCGGCTACTCACTTAAGGCCACGACCATGATGATCCGTCCAGCAGATTTCTAAACTCTGGCACCCACCTGAGGGACAATGTCTTGCCCTGTTTCCAGAGACTTGCTCCCAAAGCACTAAAAGACTGCACGCTGTCTCCGCATCTGGCTTGGACGAACTGCCCACTCGGTGCAGAAGGGGCCGTGAGCTCCCAGTGCGAGCCCCGTGAGGCTTACCCCTTGAACCTGCATCACTCAGTGAACCGACGCACAACCCCAGACAAGCCACAGCCTGGTGTGGTGACCCGGCAGAAAGCCTTCGGGAAGATAAATCTAAGCTCGCAAACGAGACTGACAATTTACAGACTCTGTTGTCACAACCAAGAATGTTACGCGCGAGCTGATCAGTAAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011034-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
PF0014713=Fibrinogen_C=FE(20.5=100)
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGGAAGGGAATGAGGCTT
R:
TCAGGTGGGTGCCAGAGTTTA
Band lengths:
249-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]