MmuEX6034729 @ mm9
Exon Skipping
Gene
ENSMUSG00000031465 | Angpt2
Description
angiopoietin 2 [Source:MGI Symbol;Acc:MGI:1202890]
Coordinates
chr8:18690263-18698210:-
Coord C1 exon
chr8:18698044-18698210
Coord A exon
chr8:18694397-18694527
Coord C2 exon
chr8:18690263-18692208
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTTGCACGTTCCAGGAT
3' ss Score
7.98
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GGCTTCGGGAGCCCTCTGGGAGAGTACTGGCTGGGCAATGAGTTTGTCTCCCAGCTGACCGGTCAGCACCGCTACGTGCTTAAGATCCAGCTGAAGGACTGGGAAGGCAACGAGGCGCATTCGCTGTATGATCACTTCTACCTCGCTGGTGAAGAGTCCAACTACAG
Seq A exon
GATTCACCTTACAGGACTCACGGGGACCGCGGGCAAAATAAGTAGCATCAGCCAACCAGGAAGTGATTTTAGCACAAAGGATTCGGACAATGACAAATGCATCTGCAAGTGTTCCCAGATGCTCTCAGGAG
Seq C2 exon
GCTGGTGGTTTGACGCATGTGGTCCTTCCAACTTGAATGGACAGTACTACCCACAAAAACAGAATACAAATAAGTTTAACGGTATCAAGTGGTACTACTGGAAGGGGTCCGGCTACTCGCTCAAGGCCACAACCATGATGATCCGGCCAGCAGATTTCTAAATGCCTGCCTACACTACCAGAAGAACTTGCTGCATCCAAAGATTAACTCCAAGGCACTGAGAGACACCAATGCATAGCAGCCCCTTTCCACATCAGGAAGTGCTCCTGGGGGTGGGGAGGGTCTGTGTGTACCAGACTGAAGCGCATCACTTAAGCCTGCACCGCTAACCAACCAAAGGCACTGCAGTCTGGAGAAACACTTCTGGGAAGGTTGTGGCTGAGGATCAGAAGGACAGCGTGCAGACTCTGTCACAGGGAAGAATGTTCCGTGGGAGTTCAGCAGTAAATAACTGGAAAACAGAACACTTAGATGGTGCAGATAAATCTTGGGACCACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031465-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
PF0014713=Fibrinogen_C=FE(20.5=100)
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCTGGTGAAGAGTCCAAC
R:
TGTCTCTCAGTGCCTTGGAGT
Band lengths:
253-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: