DreEX6059991 @ danRer10
Exon Skipping
Gene
ENSDARG00000014946 | angpt2a
Description
angiopoietin 2a [Source:ZFIN;Acc:ZDB-GENE-121101-1]
Coordinates
chr13:6174839-6178426:+
Coord C1 exon
chr13:6174839-6175005
Coord A exon
chr13:6177861-6177991
Coord C2 exon
chr13:6178266-6178426
Length
131 bp
Sequences
Splice sites
3' ss Seq
TGTGCATTTCTACTCTAAAGGAT
3' ss Score
6.08
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GGGTTTGGTGACATCTCAGGTGAACACTGGTTGGGGAATGAAATCATCTCCAAGTTGACACAAGAAAAACAACACACCCTTAGGATCGATCTGATGGACTGGGAGGGGAATATGGCCTTTTCAAAATATAGCCAGTTCTCACTCGATGGAGAGAAGCAGAATTACAG
Seq A exon
GATAAACCTCAATGGCTACAGTGGAACAGCGGGGAGAACCGGTAGTATGGGACAAACAGGAGGTGATTTCAGTGCAAAAGATCTAGACAACGACAAATGCGTTTGCAAATGCTCACAAATGCTATCAGGAG
Seq C2 exon
GTTGGTGGTTTGATGCTTGTGGACCATCCAATCTCAATGGAATATACTACCAGCAGGGACAGAACACCAACCGGTTTAATGGCATAAAATGGTATTACTGGAAAGGTTCGGCATATTCACTAAAGGCTACAACTATGATGATAAGACCAGCAAACTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014946-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
PF0014713=Fibrinogen_C=FE(20.5=100)
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGTGAACACTGGTTGGG
R:
ACCATTTTATGCCATTAAACCGGT
Band lengths:
246-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]