GgaEX1065841 @ galGal4
Exon Skipping
Gene
ENSGALG00000016330 | angiopoietin-2
Description
angiopoietin-2 [Source:RefSeq peptide;Acc:NP_990148]
Coordinates
chr3:88040553-88049786:+
Coord C1 exon
chr3:88040553-88040719
Coord A exon
chr3:88044563-88044693
Coord C2 exon
chr3:88046089-88049786
Length
131 bp
Sequences
Splice sites
3' ss Seq
TCCATTCCTCACTTCTACAGGAT
3' ss Score
9.83
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGATTTGGTGATCCTGCTGGGGAGTACTGGCTAGGAAATGAGTTTGTTTCTCAACTGACTAATCAGAAGCGCTACGTTCTTAAAATAATCCTGAAAGACTGGGAAGGAAATGAAGCGTACACTTTGTATGACCAATTCTATCTAGCAAACGAAGAACAAAAATACAG
Seq A exon
GATCCACCTTAAAGGACTTACTGGGACAGCAGGCAAAATAAGTAGTATAAGCCAACCAGGAAATGATTTTAGCACAAAGGATGCAGACAATGACAAATGTATTTGCAAATGTTCACAAATGCTAACAGGAG
Seq C2 exon
GGTGGTGGTTTGATGCTTGTGGTCCTTCTAACCTCAATGGAATGTATTATCCATTACGACAGAACAACAACAAGTTCAATGGTATCAAGTGGTACTACTGGAAAGGCTCAGGATACTCTCTCAAAGCCACGACTATGATGATTCGACCAGCAGATTTCTAAATGCTTTTGCATTCTTATGTGAATTATGTATTGTATAGTCTTCAAAGACTTTATTTGCCAAGTATATAAACACATCTGCAACTTGTCTCATTTTCAAGCCCAGAAAACATGTGCTAGTGTTCTGAAGAGATCAGCTCATTCCAACCATTGAATTGCAATAGTCTTGATCAGTTAAAGCTCATATTATTCAACTAGACACAAAGTCTAAGGCATCGACCCGATATAACAGTGATTTGGCCAAATGACTGAATAAAAAGAATATCCAAGAAGCTGTCAGACAACTGAAGGACTGTGTTTTACTGATCATTTATATTATGTATGTGTTAGTAAATAACTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016330-'7-13,'7-12,8-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
PF0014713=Fibrinogen_C=FE(20.5=100)
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGAGTACTGGCTAGGAA
R:
GCCTTTCCAGTAGTACCACTTGA
Band lengths:
258-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]