RnoEX0009293 @ rn6
Exon Skipping
Gene
ENSRNOG00000016696 | Angpt2
Description
angiopoietin 2 [Source:RGD Symbol;Acc:621861]
Coordinates
chr16:76010124-76016195:+
Coord C1 exon
chr16:76010124-76010290
Coord A exon
chr16:76013908-76014038
Coord C2 exon
chr16:76015282-76016195
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTTGCACGTTCCAGGAT
3' ss Score
7.98
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
GGCTTCGGGAGCCCTCTGGGAGAGTATTGGCTGGGCAACGAGTTTGTCTCCCAGCTGACCAGTGGGCATCGCTACGTGCTGAAGATCCAGCTGAAGGACTGGGAAGGCAGCGAGGCACACTCTCTGTATGAGCACTTCTACCTGTCCGGCGAGGAGTCCAACTACAG
Seq A exon
GATTCACCTTACAGGACTCACAGGCACGGCGGGCAAAATCAGTAGCATCAGCCAACCAGGAAGTGATTTTAGCACAAAGGATTCGGACAATGACAAATGCATCTGCAAGTGTTCCCAGATGCTCACAGGAG
Seq C2 exon
GCTGGTGGTTCGACGCATGTGGTCCTTCCAACTTGAATGGACAGTACTACCCACAAAAGCAGAATACGAATAAGTTCAACGGTATCAAGTGGTACTACTGGAAGGGGTCCGGTTACTCGCTCAAGGCCACGACCATGATGATCCGGCCAGCAGATTTCTAAATGCCTGCCTACATTATCAGAAGAACTTGCTGCATCCAAAGATTAACTCTGAGGCACTGAGAGACACCAATGCACAGTAGCCCCTTCCCACATCAGGAGGTGCTCCTGGGGGCGGGGGAGGATCTGTGTGTTCCAGACTGACGCACATCACTTAGGCCTGCACCGCTAACCAACCAAAGGAGACCCAAAGGCACTGCGGGTCTGGAGAAATACCTATGAGAAGGCCATGGTTAGAATCACAGGGACAGCATGCATTCGGACTCTGTCACAAGCAAGAATGTTACGTGGGAGTTCATCAGTAAATAACTGGAAAACAGAACCCTCAGATGGTGCAGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016696-'9-7,'9-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.044 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(25.6=100)
A:
PF0014713=Fibrinogen_C=FE(20.5=100)
C2:
PF0014713=Fibrinogen_C=PD(23.3=92.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTTGTCTCCCAGCTGAC
R:
GTAACCGGACCCCTTCCAGTA
Band lengths:
245-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]