Special

BtaEX6106723 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus myotubularin related protein 7 (MTMR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001075641]
Coordinates
chr27:18955996-18974272:+
Coord C1 exon
chr27:18955996-18956158
Coord A exon
chr27:18964138-18964295
Coord C2 exon
chr27:18974144-18974272
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCTTATTTTTTGCAGTGA
3' ss Score
7.85
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ATTCTCCACAGTCAGATCGCCACCATCGAGAAACAGGCAACGACGGCTACCGGGTGCCCTCTACTGATTCGCTGCAAGAACTTTCAGCTCTTACAGCTCATCATCCCGCAGGAAAGGGACTGCCATGATGTGTACATCTCTCTCATCCGCCTCGCGAGGCCAG
Seq A exon
TGAAATATGAGGAGCTGTACTGCTTTTCATTCAACCCCAAGCTGGATAGAGAAGAAAGGGAACAAGGCTGGATGCTGATCGAGCTCAGCGAAGAATACAAGCGCATGGGCCTCCCTAATGAATATTGGCAGCTCAGCGACGTGAATAGAGAGTACAGG
Seq C2 exon
ATCTGTGACTCCTATCCGACCGAACTGTACGTTCCCAAGTCGGCCACGGCACACATCATAGTGGGGAGTTCCAAGTTCCGGAGCAGACGGCGATTTCCTGCCCTTTCTTACTACTATAAAGATAACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010372-'6-6,'6-3,7-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0289315=GRAM=PD(23.1=21.8)
A:
PF066029=Myotub-related=PU(14.0=90.6)
C2:
PF066029=Myotub-related=FE(12.2=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGTCAGATCGCCACCATC
R:
CTGCTCCGGAACTTGGAACTC
Band lengths:
243-401
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]