DreEX6058234 @ danRer10
Exon Skipping
Gene
ENSDARG00000037101 | mtmr7a
Description
myotubularin related protein 7a [Source:ZFIN;Acc:ZDB-GENE-060421-7754]
Coordinates
chr14:30059025-30061030:+
Coord C1 exon
chr14:30059025-30059187
Coord A exon
chr14:30060650-30060807
Coord C2 exon
chr14:30060902-30061030
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTCCTGTCTTGCAGAAA
3' ss Score
12.64
5' ss Seq
AGGGTTAGT
5' ss Score
5.02
Exon sequences
Seq C1 exon
GTCCTGCACAGTTTAGTATGTAACATTGTAAAACATAAAGCATCACAGAGTGGATACCCTTTATTAATCCACTGCAAGAACTTTCAGGTCATACAGTTTATCATTCTTCAAGAGAGCGACTTGCACAATGTTTACATTTCACTCACACGTCTCTCCAGACCAG
Seq A exon
AAAAATATGAAGAGCTGTATTGTTTTTCCTTCAATCCTGCTGTTGACAAGGCTGAACGACAACACTCATGGGACTTTATAGATCTGAAGGCTGAGTACAGTCGAATGGGACTTCCAAATAAACTCTGGCATGTTACCCCAATCAACCGAGACTACAGG
Seq C2 exon
GTGTGTGACACTTACCCTGCTGACTTGTTTGTGCCTAAATCCGTCACCCTCCCTGTCATCGTAGGGAGCTCTAAGTTTCGTAGCAGAGGTCGATTTCCCACGTTGTCATATTATTGCAAAGAAAACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037101-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF066029=Myotub-related=PU(14.0=90.6)
C2:
PF066029=Myotub-related=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATCACAGAGTGGATACCCT
R:
TGCAATAATATGACAACGTGGGA
Band lengths:
243-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]