MmuEX0030110 @ mm10
Exon Skipping
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:40590410-40606921:-
Coord C1 exon
chr8:40606759-40606921
Coord A exon
chr8:40597283-40597440
Coord C2 exon
chr8:40590410-40590538
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTCCTCTCTTTCTCTTGCAGTGA
3' ss Score
11.81
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
ATTCTGCACAGTCAGATCTCCACCATTGAAAAGCAGGCGACAACAGCTACGGGCTGCCCTCTGCTTATTCGCTGCAAGAACTTCCAGATCGTACAACTTGTCATTCCACAGGAGAGAGACTGCCACGACGTGTACATCTCTCTGATACGCCTTGCACGGCCAG
Seq A exon
TGAAGTACGAGGAGCTATACTGCTTTTCCTTCAACCCCAAGCTGGATAAGGAAGAACGGGAGCAGGGCTGGTTGCTGGTTGACCTTAGTGAAGAATACAAGCGAATGGGCCTCCCTGATAATTATTGGCAGCTCAGCGATGTGAATAGAGACTACAGA
Seq C2 exon
GTTTGTGACTCTTACCCCACGGAACTGTACGTCCCCAGATCGGCCACGGCACACATCATCGTGGGCAGCTCCAAGTTCCGGAGCAGACGGCGATTTCCTGCCCTTTCCTACTACTGTAAAGACAGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0289315=GRAM=PD(21.4=21.8)
A:
PF066029=Myotub-related=PU(14.0=90.6)
C2:
PF066029=Myotub-related=PU(11.9=97.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATTGAAAAGCAGGCGACA
R:
TAGGAAAGGGCAGGAAATCGC
Band lengths:
252-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types