RnoEX0056459 @ rn6
Exon Skipping
Gene
ENSRNOG00000011420 | Mtmr7
Description
myotubularin related protein 7 [Source:RGD Symbol;Acc:1306608]
Coordinates
chr16:54794493-54815046:+
Coord C1 exon
chr16:54794493-54794655
Coord A exon
chr16:54804051-54804208
Coord C2 exon
chr16:54814918-54815046
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTCCTCTCTTTCTCTTGCAGTGA
3' ss Score
12.02
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
ATACTTCACAGTCAGATCTCCACCATTGAAAAGCAGGCGACGACAGCTACGGGCTGCCCTCTACTCATTCGCTGCAAGAACTTTCAGATTGTACAACTTGTCATACCGCAGGAGAGAGACTGCCACGACGTGTATGTCTCTCTGATACGCCTTGCGCGGCCAG
Seq A exon
TGAGATACGAGGAGCTATACTGCTTTTCCTTCAACCCCAAGCTGGATAAGGAAGAACGAGAGCAGGGCTGGTTGCTGGTTGACCTGAGTGAAGAATACAAGCGAATGGGCCTCCCGGATAATTATTGGCAGCTCAGCGATGTGAATAGAGACTACAGA
Seq C2 exon
GTTTGTGACTCTTACCCCACGGAACTGTATGTCCCCAGATCGGCCACAGCACACATCATCGTGGGCAGCTCCAAGTTCCGGAGCAGACGGCGATTTCCTGCCCTTTCCTACTACTGCAAAGAAAGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011420-'9-9,'9-8,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0289315=GRAM=PD(21.4=21.8)
A:
PF066029=Myotub-related=PU(14.0=90.6)
C2:
PF066029=Myotub-related=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAAAAGCAGGCGACGACA
R:
TAGGAAAGGGCAGGAAATCGC
Band lengths:
249-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]