Special

GgaEX0020292 @ galGal4

Exon Skipping

Gene
Description
myotubularin related protein 7 [Source:HGNC Symbol;Acc:HGNC:7454]
Coordinates
chr4:62710863-62717308:+
Coord C1 exon
chr4:62710863-62711025
Coord A exon
chr4:62715627-62715784
Coord C2 exon
chr4:62717180-62717308
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTGTTTGTTTCAGTGA
3' ss Score
9.72
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GTTCTCCACAGCCAAATATCCTCCATTGAGAAACAGGCCACAACTGCCACAGGTTGCCCACTGCTGATCCGCTGCAAGAACTTCCAGGTCATCCAACTGGTCATCCCTCAGGAGCGAGACTGCCACGATGTCTACATCTCTCTAATACGTCTGGCACGGCCAG
Seq A exon
TGAAATATGAAGAGCTGTATTGCTTCTCATTCAATCCAAAATTAGATAAAGAAGAACGAGAGAAAGGCTGGAAGCTTGTGAACCTCAGTGAAGAATATAATCGGATGGGTATTCCAAACAGCTACTGGCAGATTAGTGATGTAAACAGAGAATATGGA
Seq C2 exon
GTCTGTGACTCCTATCCTACAGAAGTGTATGTACCAAAGTCTGCTACTGCACACATCATAGTGGGGAGCTCTAAATTTCGGAGCCGAAGACGTTTCCCAGCTCTTTCCTACTACTGCAAGGATAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641-'4-5,'4-4,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF116053=Vps36_ESCRT-II=PD(28.6=32.7)
A:
PF066029=Myotub-related=PU(14.0=90.6)
C2:
PF066029=Myotub-related=FE(12.2=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAACAGGCCACAACTGC
R:
AAGAGCTGGGAAACGTCTTCG
Band lengths:
242-400
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]