BtaEX6106724 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010372 | MTMR7
Description
Bos taurus myotubularin related protein 7 (MTMR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001075641]
Coordinates
chr27:18914043-18956158:+
Coord C1 exon
chr27:18914043-18914099
Coord A exon
chr27:18953819-18953941
Coord C2 exon
chr27:18955996-18956158
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTCAAACTGATTTCCCTAGGTT
3' ss Score
7.66
5' ss Seq
TGGGTATGC
5' ss Score
6.57
Exon sequences
Seq C1 exon
CGCCCGCCCGGGACCTGCGGACTCGGGCCCGCCATGGAGCACATCCGCACGCCCAAG
Seq A exon
GTTGAAAACGTCCGCTTGGTGGATCGAATTTCTTCTAAAAAAGCAGCCCTCGGGACTTTGTATTTGACCGCCACTCACGTCATATTTGTGGAAACGGCGCCTGATACAAGGAAAGAAACATGG
Seq C2 exon
ATTCTCCACAGTCAGATCGCCACCATCGAGAAACAGGCAACGACGGCTACCGGGTGCCCTCTACTGATTCGCTGCAAGAACTTTCAGCTCTTACAGCTCATCATCCCGCAGGAAAGGGACTGCCATGATGTGTACATCTCTCTCATCCGCCTCGCGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010372-'0-2,'0-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0289315=GRAM=PU(73.1=92.7)
C2:
PF0289315=GRAM=PD(23.1=21.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCCATGGAGCACATC
R:
CGAGGCGGATGAGAGAGATGT
Band lengths:
184-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]