MmuEX0030108 @ mm9
Exon Skipping
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:41692113-41720146:-
Coord C1 exon
chr8:41720052-41720146
Coord A exon
chr8:41694248-41694370
Coord C2 exon
chr8:41692113-41692275
Length
123 bp
Sequences
Splice sites
3' ss Seq
TTTTCACCCAACGTCTCTAGGTT
3' ss Score
8.06
5' ss Seq
TGGGTATGA
5' ss Score
5.85
Exon sequences
Seq C1 exon
ATTGCGCCGCACGCGCGCGCGCAGGTGCGTGAGGCCGCGCCCGCCGGGGACCCTGCAGACGCGGGCCCGCCATGGAGCACATCCGCACGCCCAAG
Seq A exon
GTTGAAAACGTGCGCTTGGTAGACAGAGTGTCTTGTAAAAAGGCAGCGCTGGGAACTTTGTATCTGACGGCCACTCACGTCATATTCGTGGAAAATGCACCTGACACAAGAAAAGAAACCTGG
Seq C2 exon
ATTCTGCACAGTCAGATCTCCACCATTGAAAAGCAGGCGACAACAGCTACGGGCTGCCCTCTGCTTATTCGCTGCAAGAACTTCCAGATCGTACAACTTGTCATTCCACAGGAGAGAGACTGCCACGACGTGTACATCTCTCTGATACGCCTTGCACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0289315=GRAM=PU(1.8=12.5)
A:
PF0289315=GRAM=FE(71.4=100)
C2:
PF0289315=GRAM=PD(21.4=21.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCCATGGAGCACATC
R:
CGTGCAAGGCGTATCAGAGAG
Band lengths:
188-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: