DreEX6058235 @ danRer10
Exon Skipping
Gene
ENSDARG00000037101 | mtmr7a
Description
myotubularin related protein 7a [Source:ZFIN;Acc:ZDB-GENE-060421-7754]
Coordinates
chr14:30058232-30059187:+
Coord C1 exon
chr14:30058232-30058427
Coord A exon
chr14:30058792-30058914
Coord C2 exon
chr14:30059025-30059187
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTTTGTGTCTGCAGGTT
3' ss Score
11.55
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GGAGGAGCCATATGTAACCGTATCAACCCGGATTCGAAGCGGCTCAGCGTTTCGGATAATACTTGAAATATTGTTTTGTTTACACGAACACAAAAACACTCGTTTAGCATGACACTAATACGTGTTCCTGAACCCTGATACGCTTCATGCGCCAGAGGTGTGGTGGTCAGAGATGGAGCACATCAGAATGCCAAAG
Seq A exon
GTTGAAAATGTCCGGTTAGTGGACAGAAGTTCCTCTCGGAAATCTCAAGTGGGCACACTCTACCTGACAGCAACACACACTATCTTTGTAGGTAAAGGATCTGAGGACCGAAATGAGCTTTGG
Seq C2 exon
GTCCTGCACAGTTTAGTATGTAACATTGTAAAACATAAAGCATCACAGAGTGGATACCCTTTATTAATCCACTGCAAGAACTTTCAGGTCATACAGTTTATCATTCTTCAAGAGAGCGACTTGCACAATGTTTACATTTCACTCACACGTCTCTCCAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037101-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTCAGCGTTTCGGATAAT
R:
ACCTGAAAGTTCTTGCAGTGGA
Band lengths:
246-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]