RnoEX0056461 @ rn6
Exon Skipping
Gene
ENSRNOG00000011420 | Mtmr7
Description
myotubularin related protein 7 [Source:RGD Symbol;Acc:1306608]
Coordinates
chr16:54765325-54804208:+
Coord C1 exon
chr16:54765325-54765418
Coord A exon
chr16:54792659-54792781
Coord C2 exon
chr16:54804051-54804208
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTTCATCCATCCTTTCTAGGTT
3' ss Score
10.95
5' ss Seq
TGGGTATGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
CCATTGCGCCGCACGCGCGCGCAGGTGCGTGAGGCCGCGCCCGCCGGGAACCCTGCAGACGCGGGCCGCCATGGAACACATCCGTACCCCTAAG
Seq A exon
GTTGAAAATGTGCGCTTGGTAGACCGAGTGTCTTGTAAAAAAGCAGCGCTGGGAACTTTGTATCTGACGGCCACTCACGTCATATTCGTGGAAAATGCACCCGACACAAGGAAAGAAACCTGG
Seq C2 exon
TGAGATACGAGGAGCTATACTGCTTTTCCTTCAACCCCAAGCTGGATAAGGAAGAACGAGAGCAGGGCTGGTTGCTGGTTGACCTGAGTGAAGAATACAAGCGAATGGGCCTCCCGGATAATTATTGGCAGCTCAGCGATGTGAATAGAGACTACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011420_MULTIEX1-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0289315=GRAM=FE(71.4=100)
C2:
PF066029=Myotub-related=PU(14.0=90.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACACATCCGTACCCCTAA
R:
TGTAGTCTCTATTCACATCGCTGA
Band lengths:
178-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]