BtaEX6107169 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003275 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr27:36315296-36317195:-
Coord C1 exon
chr27:36316998-36317195
Coord A exon
chr27:36316463-36316561
Coord C2 exon
chr27:36315296-36315394
Length
99 bp
Sequences
Splice sites
3' ss Seq
GAGCCAGTGTTTCTCCTCAGAAA
3' ss Score
5.03
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GATGACCAGACCCCACTTCACTGTGCAGCTCGTATTGGCCACACAAACATGGTGAAGCTCCTGCTAGAAAATAATGCCAACCCCAACCTGGCCACCACTGCCGGGCACACCCCTCTGCACATCGCGGCCCGAGAGGGCCACGTGGAGACGGCGCTGGCCCTTCTGGAAAAGGAGGCGTCCCAGACGTGCATGACGAAG
Seq A exon
AAAGGATTTACCCCTCTCCACGTGGCAGCCAAGTACGGGAAGGTGCGCATGGCAGAGCTGCTGCTGGAGCACGATGCACACCCTAACGCCGCCGGGAAG
Seq C2 exon
AGCGGCCTGACCCCCCTGCATGTGGCCGTGCACCACAACCACCTGGACGTCGTCCGGCTGCTGCTGCCCCGGGGCGGATCCCCGCACAGCCCCGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003275-'14-20,'14-18,15-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.318 A=0.333 C2=0.333
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=50.0),PF0002325=Ank=WD(100=50.0),PF127962=Ank_2=PU(8.3=9.1)
A:
PF127962=Ank_2=FE(44.4=100)
C2:
PF127962=Ank_2=PD(43.1=93.9),PF127962=Ank_2=PU(10.8=24.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAATGCCAACCCCAACCTGG
R:
CGACGTCCAGGTGGTTGTG
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]