DreEX0000367 @ danRer10
Exon Skipping
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68200981-68231679:-
Coord C1 exon
chr5:68231482-68231679
Coord A exon
chr5:68229253-68229351
Coord C2 exon
chr5:68200981-68201185
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTGGGTGTCCTGCAGAAA
3' ss Score
9.47
5' ss Seq
AAAGTATGG
5' ss Score
3.77
Exon sequences
Seq C1 exon
GATGACCAGACGCCGCTACACTGTGCCTCCCGCATGGGCCACAACGAGATGGTGAAGTTGCTTCTGGAGCACAAGGCCAACTCAAACTCCACCACCACAGCAGGACACACACCGCTGCACATCGCGGCCCGCGAGGGACACACACAAACTGCCAGCATCCTCCTGGACATGAACGCCCAGCTCACCAAAATGACCAAG
Seq A exon
AAAGGCTTCACTCCTCTTCATGTTGCAGCCAAATACGGAAAGGTGGACGTGGCAGTTCTGCTTCTGGAGAGGGGAGCAAATCCAAACGCTGCTGGAAAA
Seq C2 exon
GCCCAGCCGGTGCCTGATGAGCTGGTGGCCAAGCTTTTGGGGAACCAGGCCACGTTCAGTCCTGTGGTGACGGTGGAGCCTCGGCGCCGGAAGTTTCACCGTCCCATCGGCCTAAGAATCCCACTGCCACCCTCATGGAGAGAGAGCCCGCGGGACGCCGGAGAGGGAGACACCACCAGCCTGCGCCTGCTCTGCAGCGTCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093_MULTIEX2-14/28=13-C2
Average complexity
C2
Mappability confidence:
94%=100=94%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=0.060 C2=0.116
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=49.3),PF127962=Ank_2=PU(29.0=40.3)
A:
PF127962=Ank_2=FE(35.5=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTCCTGGACATGAACGC
R:
GTGGCAGTGGGATTCTTAGGC
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]