MmuEX6034905 @ mm10
Exon Skipping
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:23097846-23099696:+
Coord C1 exon
chr8:23097846-23098043
Coord A exon
chr8:23098921-23099019
Coord C2 exon
chr8:23099598-23099696
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGGCCTGTGTTTCTCCTCAGAAA
3' ss Score
10.15
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATGACCAGACACCGCTTCACTGTGCTGCTCGAATCGGCCACACAGGCATGGTGAAGCTCCTGCTGGAGAATGGTGCCAGCCCCAATCTGGCTACCACTGCTGGCCACACACCCCTACACACCGCAGCCCGTGAGGGACACGTGGACACAGCCCTGGCCCTGCTGGAGAAGGAGGCATCCCAAGCCTGCATGACCAAG
Seq A exon
AAAGGATTTACCCCTCTGCACGTGGCTGCTAAGTACGGGAAGGTACGGTTGGCGGAGCTGCTGCTGGAACACGATGCACACCCCAATGCAGCTGGGAAG
Seq C2 exon
AACGGCTTGACTCCTCTGCATGTGGCCGTCCATCACAACAACCTGGACATTGTCAAACTTCTTCTTCCCCGAGGTGGCTCCCCCCACAGCCCTGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543-'13-34,'13-29,20-34=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.328 A=0.209 C2=0.277
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=50.0),PF0002325=Ank=WD(100=48.5),PF127962=Ank_2=PU(8.5=9.1)
A:
PF127962=Ank_2=FE(45.1=100)
C2:
PF127962=Ank_2=PD(43.1=93.9),PF127962=Ank_2=PU(12.0=27.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACAGGCATGGTGAAGCTC
R:
CACATGCAGAGGAGTCAAGCC
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types