RnoEX6055935 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73788659-73790489:-
Coord C1 exon
chr16:73790292-73790489
Coord A exon
chr16:73789348-73789446
Coord C2 exon
chr16:73788659-73788757
Length
99 bp
Sequences
Splice sites
3' ss Seq
CAGCCTGTGTTTCTCCTCAGAAA
3' ss Score
8.87
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GACGACCAGACACCACTTCACTGTGCTGCTCGCATCGGCCACACGAGCATGGTGAAGCTCCTGCTGGAGAATGACGCCAGCCCCAACCTGGCTACCACTGCTGGCCACACACCTCTGCACACCGCAGCCCGTGAGGGTCACGTGGACACAGCCCTGGCCCTGCTGGAAAAGGAGGCATCCCAAGCCTGCATGACCAAG
Seq A exon
AAAGGATTTACCCCTCTCCACGTGGCTGCCAAGTATGGGAAGGTCCGGCTGGCAGAGCTGCTGCTGGAACATGATGCCCATCCCAACGCGGCCGGAAAG
Seq C2 exon
AACGGCTTGACTCCCCTGCATGTGGCCGTCCATCACAACAACTTGGACATTGTCCAGCTTCTCCTTCCCCGAGGTGGCTCCCCGCACAGCCCTGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-'23-21,'23-19,24-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=0.242 C2=0.273
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=50.0),PF0002325=Ank=WD(100=48.5),PF127962=Ank_2=PU(8.3=9.1)
A:
PF0002325=Ank=WD(100=100.0)
C2:
PF127962=Ank_2=PD(43.1=93.9),PF127962=Ank_2=PU(8.3=18.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACGAGCATGGTGAAGCTC
R:
CACATGCAGGGGAGTCAAGC
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]