RnoEX6055936 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73783288-73789446:-
Coord C1 exon
chr16:73789348-73789446
Coord A exon
chr16:73788659-73788757
Coord C2 exon
chr16:73783288-73783485
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTGTCACTCTGCAGAAC
3' ss Score
10.59
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
AAAGGATTTACCCCTCTCCACGTGGCTGCCAAGTATGGGAAGGTCCGGCTGGCAGAGCTGCTGCTGGAACATGATGCCCATCCCAACGCGGCCGGAAAG
Seq A exon
AACGGCTTGACTCCCCTGCATGTGGCCGTCCATCACAACAACTTGGACATTGTCCAGCTTCTCCTTCCCCGAGGTGGCTCCCCGCACAGCCCTGCCTGG
Seq C2 exon
AATGGCTACACCCCTTTGCACATCGCAGCCAAGCAGAACCAGATAGAGGTGGCCCGCAGTCTACTGCAATACGGAGGGTCCGCGAATGCAGAGTCTGTACAAGGAGTGACCCCGCTTCACCTGGCTGCCCAAGAGGGCCACACGGAAATGGTCGCTCTTCTCCTGTCAAAGCAAGCCAATGGCAACCTGGGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-'24-23,'24-21,25-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.273 C2=0.152
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=100.0)
A:
PF127962=Ank_2=PD(43.1=93.9),PF127962=Ank_2=PU(8.3=18.2)
C2:
PF127962=Ank_2=PD(88.9=97.0),PF127962=Ank_2=PU(10.8=12.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTATGGGAAGGTCCGGCTG
R:
CGGGGTCACTCCTTGTACAGA
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]