RnoEX6055937 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73778853-73788757:-
Coord C1 exon
chr16:73788659-73788757
Coord A exon
chr16:73783288-73783485
Coord C2 exon
chr16:73778853-73778951
Length
198 bp
Sequences
Splice sites
3' ss Seq
ACGGCCTCCTTTTGTTTCAGAAT
3' ss Score
10.19
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AACGGCTTGACTCCCCTGCATGTGGCCGTCCATCACAACAACTTGGACATTGTCCAGCTTCTCCTTCCCCGAGGTGGCTCCCCGCACAGCCCTGCCTGG
Seq A exon
AATGGCTACACCCCTTTGCACATCGCAGCCAAGCAGAACCAGATAGAGGTGGCCCGCAGTCTACTGCAATACGGAGGGTCCGCGAATGCAGAGTCTGTACAAGGAGTGACCCCGCTTCACCTGGCTGCCCAAGAGGGCCACACGGAAATGGTCGCTCTTCTCCTGTCAAAGCAAGCCAATGGCAACCTGGGGAACAAG
Seq C2 exon
AGTGGACTCACTCCTCTCCACCTGGTAGCACAAGAAGGCCATGTTCCAGTGGCGGATGTGCTGATTAAACATGGCGTCACAGTGGATGCTACGACCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-'25-25,'25-23,26-25=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.152 C2=0.061
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(43.1=93.9),PF127962=Ank_2=PU(8.3=18.2)
A:
PF127962=Ank_2=PD(88.9=97.0),PF127962=Ank_2=PU(10.8=12.1)
C2:
PF127962=Ank_2=FE(45.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGCTTGACTCCCCTGC
R:
GTCGTAGCATCCACTGTGACG
Band lengths:
194-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]